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Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

  • 1.  Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-05-2023 08:45

    Dear AAPS Therapeutic Product Immunogenicity Community Members, 

    When an improved ADA/NAb method is developed, do you typically conduct a cross-validation or bridging study to ensure that the new method is comparable or superior to the original method? Any difference in the approach for applying the new method within the same study or for different studies? 

    Thank you in advance for your feedback!

    All the best,

    Bonnie

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    Bonnie Wu Ph.D.
    Associate Scientific Director
    Johnson&Johnson Innovative Medicine
    Spring House PA
    [email protected]
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  • 2.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-06-2023 08:21

    We used a full set of clinical samples and tested them in old and new methods to investigate whether the new method (with better drug tolerance) changed the clinical assessment previously done by the old method.



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    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.Associate Scientific DirectorTakeda
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  • 3.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-06-2023 22:13

    Hi Lili,

    Thanks for sharing your comments. It is ideal to use clinical samples to compare the old and new methods for their capacity to detect ADA or NAb. Mock samples could also be used for evaluation if clinical samples are not available. There were peers questioning whether cross-validation is needed for an improved method that already demonstrates enhanced assay parameters especially when the same PC is used in both the old and new methods. The advantage to test clinical samples is to evaluate whether the new method has the comparable or superior capacity to detect ADA or NAb in clinical samples in addition to PC. 

    Thank you!

    Best,

    Bonnie



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    Bonnie Wu Ph.D.
    Associate Scientific Director
    Janssen Research & Development LLC
    Spring House PA
    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.
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  • 4.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-07-2023 09:38

    For PK assays, the Guidance is clear. A cross-validation is required if:

     

    1. Changing methods in the middle of a study
    2. Changing methods between studies, but the data will be combined
    3. Changing methods and the studies will be compared

     

    1. and 2) are not common. 3) is often the case.

     

    I would follow the same approach for ADA, but in this case the degree to which studies will be compared (3) is not clear. If for example, PhI study shows no ADA and Ph II has high frequency of ADA, is it necessary to prove this is due to the assay, or can it be assumed if the new assay was made more drug tolerant? What would you compare; the prevalence, the incidence, the titer, the S/N? If immunogenicity is a rare event, it may be difficult to do a cross-validation without running a large number of samples. How will the outcome of the cross-validation affect the future direction of the program?

     

    For PK, we typically hope the cross-validation will show the methods are comparable. For ADA, that might not be the desired outcome. In my experience, if we knew the old method had a flaw, such as poor drug tolerance, and we knew from validation data that the new method was improved, we usually have not done such a cross-validation.

     

    John Kamerud






  • 5.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-08-2023 15:43

    Hi John,

    Thank you for sharing your comments. The guidance of cross-validation for PK assays provides different circumstance under which a cross-validation should be performed for an improved method. This can also be leveraged to ADA/NAb assays. We typically conduct cross-validation for scenario #1 unless all the samples are reanalyzed by the new method. The bioanalytical group may not be aware of #2 and #3 if we are not informed by the therapeutic team. 

    If the same PC is used, we can make preliminary comparison of the old and new methods through key assay parameters, e.g., sensitivity and drug tolerance. Since the analytes of the ADA/NAb assays are polyclonal antibodies in test samples, a more thorough comparison of the two methods is usually performed by analyzing a number of blinded study samples (e.g., 10-20 ADA/NAb positive and Negative samples) to compare their ability for detection of ADA/NAb in addition to PC. However, if the mock samples are prepared from PC, I wonder whether it is necessary to test these samples if the direct comparison of key assay parameters have already provided adequate information.

    The cross-validation or a control document will provide a summary of the bridging study that demonstrates that the new method is comparable or superior to the old method (e.g., platform change leading to higher throughout, better precision, higher sensitivity/drug tolerance) and serves as a useful report for regulatory review or QC audit.

    Thank you for the discussion!

    Best,

    Bonnie



    ------------------------------
    Bonnie Wu Ph.D.
    Associate Scientific Director
    Janssen Research & Development LLC
    Spring House PA
    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.
    ------------------------------



  • 6.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-06-2023 12:27

    Hi Bonnie,

    it really depends on the stage of the clinical development when these assays are used. For example, if you change them from Phase 1 to Phase 2, you would only conduct the tests that satisfy you as a company. On the opposite end, if you change assay during a pivotal study, you will need to do a lot of comparative tests to show the regulators how the assay has changed. In that case, a rigorous cross-validation including clinical samples would be needed.



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    Francesca Civoli
    Principal
    Francesca Civoli Consulting LLC
    Half Moon Bay CA
    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.
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  • 7.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-06-2023 22:29

    Hi Francesca,

    Thank you for sharing your insight. It is an interesting perspective to consider the stage of clinical development. One white paper discusses about conducting the cross-validation when the method switching occurs during the same study. If the new method will be used for a different study, no cross-validation is needed. However, I think there should at least be a control document in place that compares the assay parameters of both methods to facilitate the regulatory review or QC audit.

    Thank you!

    Best,

    Bonnie



    ------------------------------
    Bonnie Wu Ph.D.
    Associate Scientific Director
    Janssen Research & Development LLC
    Spring House PA
    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.
    ------------------------------



  • 8.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-08-2023 08:17

    All great answers, but please allow me to use this thread to ask a follow up for the "improved" part of the question. 

    If the sensitivity of the new method is > the titer precision of the old method, it is highly likely that the incurred sample in the titer tier will fail (sample that titered at 1:64, may now titer at 1:1024). This is not a failure of the method but rather it's success. How do you reconcile?

    Ritankar 



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    Ritankar Majumdar
    Senior Lead Scientist
    Covance Inc. - Chantilly, Va
    Chantilly VA
    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.
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  • 9.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-08-2023 16:08

    Hi Ritankar,

    For ADA and NAb assays, the new method usually improves key assay parameters. In this case, we don't expect same assay results in an incurred sample analysis like PK assays. Instead, the new method should generate better ADA/NAb results, e.g., higher sensitivity and drug tolerance or less matrix interference.

    Thanks!

    Best,

    Bonnie



    ------------------------------
    Bonnie Wu Ph.D.
    Associate Scientific Director
    Janssen Research & Development LLC
    Spring House PA
    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.
    ------------------------------



  • 10.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-09-2023 08:29

    The improved new method could have higher titer values reported as expected; However, some of the lower levels of ADA detected by the new method may or may not cause additional changes in PK/PD, safety and efficacy clinically. This is one of the key questions for a study team to answer and justify what the differences are between old vs new methods during regulatory submissions. 



    ------------------------------
    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.Associate Scientific DirectorTakeda
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  • 11.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-10-2023 08:26

    Thanks @lili and @bonnie.

    @lili, while the impact of higher ADA titer with the new method and it's impact on interpretation on PKPD is definitely important, my thoughts are stuck on the logistical aspects of carrying out the immunogenicity study.

    Specifically, if the testing had been initiated at site one, using an older method and testing is continued at site two using the improved method, will you now re-analyze all the older samples with the new method, as the titer results no longer concordant? 



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    Ritankar Majumdar
    Senior Lead Scientist
    Covance Inc. - Chantilly, Va
    Chantilly VA
    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.
    ------------------------------



  • 12.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-13-2023 09:06

    The cleanliest way to do this is to re-analyze all the older samples with the new method, so that you can answer what the relationship is between old vs new methods (ADA status, titers, transient/persistent) in preparing any future questions from the regulatory agencies.

    Typically, only one (improved) method is used to report clinical results unless requested by the FDA that both set of data is needed.



    ------------------------------
    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.Associate Scientific DirectorTakeda
    ------------------------------



  • 13.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-13-2023 18:44
    Hi Lili.
    Would that posit that cross validation not be conducted for any new ADA method with sensitivity significantly higher than the previous one as the sole purpose of the cross val is to see whether samples across two labs are equivalent (if we are reanalyzing all samples anyway) . Also how do we bridge the gap when samples cannot be reanlysed ( depleted samples, geofenced samples or cost / logistic concern)
    Ritankar 





  • 14.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-14-2023 09:36

    I found this reference provided useful information for your consideration: Strategies for method comparison when changes in the immunogenicity method are needed within a clinical program. Johanna R Mora, 2020. Please note that method comparison approaches may vary according to the immunogenicity the risk assessment of the biotherapeutic and operational circumstances.

    If you ever want to use the data generated from the old method, using the same PC and clinical samples in both assays to access the (non)comparability is informative. 



    ------------------------------
    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.Associate Scientific DirectorTakeda
    ------------------------------



  • 15.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-15-2023 10:19

    To bridge the gap in our lab we analyzed controls from the new ADA assay to the old assay and vice versa. Also, run some samples same time to see the difference.



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    Asma Ejaz, Ph.D.
    Associate Director
    Celldex Therapeutics
    [email protected]
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  • 16.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-16-2023 08:49
    Thanks Lili,
    Wonderful reference. I do feel that the waters do get muddy once we get to the conclusion section on limits of comparability. The industry needs a consensus on those. 
    Ritankar. 
    "When data pooling across methods is needed, it is important to define the limits of comparability."







  • 17.  RE: Discussion on the Need of Cross-Validation for Improved ADA/NAb Methods

    Posted 11-18-2023 09:11

    I heard there is an effort within AAPS ADA harmonization group, who is adding cross-validation information to the existing ADA harmonization paper. Hopefully this addendum will add more clarity and provide a consensus for the industry.



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    [email protected]

    Disclaimer: Opinions expressed are solely my own and do not express the views or opinions of my employer.Associate Scientific DirectorTakeda
    ------------------------------